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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_16_5821417_5821827_R

Intron Information:

Intron Rank:
5
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
5821417 - 5821827
Intron Length:
411

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TGG|GTAAGTCAC
5'SS Class:
strong_major
3'SS Sequence:
TCTCTCTCCCCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
GCCTGAC
U12 Branch Point Sequence:
TGGGCCTGACCT
Flanking Amino Acid:
LGNSIIIDLLGIAVGHIYYF
Intron Amino Acid Position:
175

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
85
0.82
1
72.3
39.5
Major BPS
51.1
0.03
1.2
45
39.9
Major PPT
80.6
0.69
0.7
73
31.9
Minor 5ss
34.1
-1.8
2.9
36.4
40.6
Minor BPS
50.2
0.08
1.9
69.43
47

Associated Gene:

Gene:
DERL3
Ensembl Gene ID:
ENSAPLG00000003810
Chromosome:
16

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000003896
5820627 - 5824033
3407