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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_16_5822024_5823025_R

Intron Information:

Intron Rank:
4
Intron Class:
minor
Intron Phase:
0
Intron Coordinates:
5822024 - 5823025
Intron Length:
1002

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ACA|GTATCCTTT
5'SS Class:
strong_minor
3'SS Sequence:
CGGTAGCTGCTAG|C
3'SS Class:
strong_BPS
U2 Branch Point Sequence:
CTTTGAC
U12 Branch Point Sequence:
TTTTCTTTGACT
Flanking Amino Acid:
MFLFGGFLMTLFGLFASLFF
Intron Amino Acid Position:
110

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
51.2
0.03
1.2
56.4
43.4
Major BPS
74.1
0.6
1
66.7
39.9
Major PPT
51.8
0.04
1.1
43
43.1
Minor 5ss
97.5
1.6
0.6
95.7
13.5
Minor BPS
88.5
1.29
0.8
99.14
22.1

Associated Gene:

Gene:
DERL3
Ensembl Gene ID:
ENSAPLG00000003810
Chromosome:
16

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000003896
5820627 - 5824033
3407