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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_16_5823120_5823585_R

Intron Information:

Intron Rank:
3
Intron Class:
minor_hybrid
Intron Phase:
2
Intron Coordinates:
5823120 - 5823585
Intron Length:
466

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TCT|GTATCCTTT
5'SS Class:
strong_minor
3'SS Sequence:
CTCCTGCCCTCAG|G
3'SS Class:
minor_hybrid
U2 Branch Point Sequence:
TTCCTAT
U12 Branch Point Sequence:
TATACTGCAACC
Flanking Amino Acid:
GFSFFFNMIFLYRYCRMLEE
Intron Amino Acid Position:
78

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
49.8
-0
1.3
55.7
43.9
Major BPS
68.8
0.47
1.3
66.7
41.7
Major PPT
72.1
0.5
0.8
68.8
31.7
Minor 5ss
100
1.68
0.4
100
0
Minor BPS
47.7
-0.1
2.2
64.6
40.8

Associated Gene:

Gene:
DERL3
Ensembl Gene ID:
ENSAPLG00000003810
Chromosome:
16

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000003896
5820627 - 5824033
3407