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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_16_5823660_5823777_R

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
5823660 - 5823777
Intron Length:
118

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTCAGGGCC
5'SS Class:
major
3'SS Sequence:
TCCTCTCTTGCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
CTCCCAC
U12 Branch Point Sequence:
CTCCTCCCACCC
Flanking Amino Acid:
NPDLIFRKLQVWRLVTNFLF
Intron Amino Acid Position:
54

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
73.8
0.56
1.3
71
34.6
Major BPS
50
0
1.2
61.8
35.9
Major PPT
85.3
0.79
0.7
80.1
25.2
Minor 5ss
25.9
-2.8
3.3
33.7
41.8
Minor BPS
40
-0.7
2
47.95
41.8

Associated Gene:

Gene:
DERL3
Ensembl Gene ID:
ENSAPLG00000003810
Chromosome:
16

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000003896
5820627 - 5824033
3407