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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_16_5823844_5823940_R

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
5823844 - 5823940
Intron Length:
97

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GTG|GTGAGGGGA
5'SS Class:
major
3'SS Sequence:
TGTGTCCCCGCAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
GTGCCAG
U12 Branch Point Sequence:
TGTGCTGTGTCT
Flanking Amino Acid:
TACVITTAAVQLELLTPFQL
Intron Amino Acid Position:
32

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
76.3
0.62
1
61.9
38.6
Major BPS
38.3
-0.7
1.7
43.9
48.6
Major PPT
73
0.52
0.9
66.4
35.7
Minor 5ss
23.3
-3.1
3.2
25.7
39.3
Minor BPS
36.5
-0.9
3.7
66.97
44.5

Associated Gene:

Gene:
DERL3
Ensembl Gene ID:
ENSAPLG00000003810
Chromosome:
16

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000003896
5820627 - 5824033
3407