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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_16_5834529_5835079_F

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
5834529 - 5835079
Intron Length:
551

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TCA|GTAAGTACT
5'SS Class:
major
3'SS Sequence:
CCTTCCCTCGCAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TCTCCAT
U12 Branch Point Sequence:
TTACACAGCACT
Flanking Amino Acid:
NISIINAPTSYIQVFMNKTW
Intron Amino Acid Position:
38

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
78.6
0.67
1
78.5
35.5
Major BPS
64.7
0.37
1.3
74.7
40
Major PPT
78.4
0.64
0.7
72.6
25.5
Minor 5ss
40.6
-1.1
2.8
58.6
39.3
Minor BPS
42
-0.5
2.2
65.95
43.5

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000003871
Chromosome:
16

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000004028
5831285 - 5842319
11035
ENSAPLT00000037762
5831490 - 5842434
10945
ENSAPLT00000021990
5831490 - 5842319
10830