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Intron Name: Anas_platyrhynchos_platyrhynchos_16_5835241_5836382_F

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

5835241 - 5836382

Intron Length:

1142

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

AAG|GTAAGAGGG

5'SS Class:

strong_major

3'SS Sequence:

CTTCTCTCTGAAG|G

3'SS Class:

major_PPT

U2 Branch Point Sequence:

CTCACAA

U12 Branch Point Sequence:

TTCTCTCTGAAG

Flanking Amino Acid:

VAGPMAIMLGRKMSLLVNNI

Intron Amino Acid Position:

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

88.3

0.9

69.9

41.1

Major BPS

56.2

0.15

64.6

32.2

Major PPT

74.4

0.55

75.4

27.1

Minor 5ss

29.8

-2.3

3.3

38.5

46.6

Minor BPS

49.2

-0.2

1.9

60.18

41.9

Associated Gene:

Gene:

Ensembl Gene ID:

ENSAPLG00000003871

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000037762

5831490 - 5842434

10945

ENSAPLT00000021990

5831490 - 5842319

10830

ENSAPLT00000004028

5831285 - 5842319

11035