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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_16_58367_59057_R

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
58367 - 59057
Intron Length:
691

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAGGCGT
5'SS Class:
strong_major
3'SS Sequence:
CGTGTTGTTCTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CATTGAC
U12 Branch Point Sequence:
TTGACCAAAATG
Flanking Amino Acid:
GVGERMYQSKRVVQEPGSAV
Intron Amino Acid Position:
135

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
88.2
0.9
0.9
73.4
43.3
Major BPS
66.4
0.41
1
58.7
38.1
Major PPT
70.3
0.46
1
61.5
44.5
Minor 5ss
32.5
-2
3.4
47.7
47.8
Minor BPS
47.3
-0.3
2
56.85
44.8

Associated Gene:

Gene:
DHX37
Ensembl Gene ID:
ENSAPLG00000009562
Chromosome:
16

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000010012
43730 - 60314
16585