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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_16_5837230_5837413_F

Intron Information:

Intron Rank:
5
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
5837230 - 5837413
Intron Length:
184

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAATGTAG
5'SS Class:
major
3'SS Sequence:
TATTTTTCTCCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATTTTAT
U12 Branch Point Sequence:
TTTATTTTATTT
Flanking Amino Acid:
GLVLGQVVGLRELLGGEESW
Intron Amino Acid Position:
176

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
79
0.68
1
68.5
38.9
Major BPS
87.7
0.94
0.8
77.7
36.7
Major PPT
88.8
0.87
0.7
81.6
35.8
Minor 5ss
36.1
-1.6
3.2
46.5
48.8
Minor BPS
61.8
0.45
1.6
79.69
37

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000003871
Chromosome:
16

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000021990
5831490 - 5842319
10830
ENSAPLT00000004028
5831285 - 5842319
11035
ENSAPLT00000037762
5831490 - 5842434
10945