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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_16_5838544_5839264_F

Intron Information:

Intron Rank:
7
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
5838544 - 5839264
Intron Length:
721

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TCG|GTAAGCAGC
5'SS Class:
major
3'SS Sequence:
GTTCTCTTCCCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
CCCTTAC
U12 Branch Point Sequence:
CTTCCCTTACTG
Flanking Amino Acid:
SAMQLCGNDSMYFYAAYVFQ
Intron Amino Acid Position:
292

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
79.8
0.7
1
67.4
44
Major BPS
56.6
0.16
1.1
48.9
36.2
Major PPT
80.9
0.7
0.8
72.9
37.4
Minor 5ss
40.2
-1.1
2.9
53
44
Minor BPS
59.7
0.17
1.8
64.41
43.9

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000003871
Chromosome:
16

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000037762
5831490 - 5842434
10945
ENSAPLT00000021990
5831490 - 5842319
10830
ENSAPLT00000018621
5838520 - 5844726
6207
ENSAPLT00000004028
5831285 - 5842319
11035