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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_16_5839374_5840566_F

Intron Information:

Intron Rank:
8
Intron Class:
major-like
Intron Phase:
1
Intron Coordinates:
5839374 - 5840566
Intron Length:
1193

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CCT|GTGTGAGAC
5'SS Class:
weak_major
3'SS Sequence:
TGGCAAATAACAG|T
3'SS Class:
degenerate_major
U2 Branch Point Sequence:
TTGGCAA
U12 Branch Point Sequence:
TTTTGTGTGACT
Flanking Amino Acid:
GSCELIASVTLSVLVSLLVL
Intron Amino Acid Position:
342

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
57.3
0.17
1.1
51.5
33
Major BPS
50.7
0.02
1.5
63.4
44.3
Major PPT
56.1
0.14
1.1
48.5
42.7
Minor 5ss
34.3
-1.8
3.4
50.5
46.2
Minor BPS
51.7
0.13
2.4
82.48
39.6

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000003871
Chromosome:
16

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000037762
5831490 - 5842434
10945