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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_16_5840693_5841336_F

Intron Information:

Intron Rank:
10
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
5840693 - 5841336
Intron Length:
644

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTCAGTTCC
5'SS Class:
strong_major
3'SS Sequence:
TTTCTTTCTCCAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTTAA
U12 Branch Point Sequence:
GTGTTTTTAACT
Flanking Amino Acid:
AYILSFGIGPAGVTGVLPTE
Intron Amino Acid Position:
383

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
80.9
0.73
1.2
75.8
35
Major BPS
87.3
0.93
0.8
78
36.5
Major PPT
91.6
0.94
0.6
84.9
29.9
Minor 5ss
36.9
-1.5
2.7
45.6
42.5
Minor BPS
76.3
0.9
1.1
83.91
37.2

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000003871
Chromosome:
16

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000037762
5831490 - 5842434
10945
ENSAPLT00000021990
5831490 - 5842319
10830
ENSAPLT00000004028
5831285 - 5842319
11035