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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_16_5847436_5848405_F

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
5847436 - 5848405
Intron Length:
970

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTAAGCCCA
5'SS Class:
strong_major
3'SS Sequence:
TTTTCTTTTAAAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TATTGAT
U12 Branch Point Sequence:
TTTCTTTTAAAG
Flanking Amino Acid:
QVSIINSPAEYIKSFIRECW
Intron Amino Acid Position:
41

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
87.6
0.89
0.9
71.6
40.2
Major BPS
88.6
0.96
0.8
77.7
37.1
Major PPT
84.1
0.77
0.9
86.1
25.6
Minor 5ss
38.2
-1.3
3
48.7
47
Minor BPS
65.1
0.33
1.4
69.62
37.6

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000004632
Chromosome:
16

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000004784
5847316 - 5855184
7869