About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_16_5860549_5860986_F

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
5860549 - 5860986
Intron Length:
438

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CTG|GTAGGACTT
5'SS Class:
major
3'SS Sequence:
GTCTTCTCTTTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CTCTTAT
U12 Branch Point Sequence:
TTTTCTATAGCT
Flanking Amino Acid:
IGRFLEGIGAGIHMNAHVQY
Intron Amino Acid Position:
121

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
74.5
0.58
1.1
68.2
42.8
Major BPS
79.1
0.72
1
69.3
38.4
Major PPT
79.5
0.66
0.8
77.7
31.2
Minor 5ss
36.6
-1.5
3.6
53.3
44.9
Minor BPS
65.9
0.58
1.8
89
35.6

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000020426
Chromosome:
16

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000032014
5858973 - 5864869
5897