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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_16_5876507_5876654_F

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
5876507 - 5876654
Intron Length:
148

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTATAGTAC
5'SS Class:
major
3'SS Sequence:
TTATCCCCTCCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CTTTTAT
U12 Branch Point Sequence:
TTATTCTACACA
Flanking Amino Acid:
GKATGQIAGQRELLGSRSLW
Intron Amino Acid Position:
156

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
72.8
0.54
1
65.1
35.3
Major BPS
84.1
0.85
0.9
75.3
39.4
Major PPT
79.7
0.67
0.8
70.8
35.8
Minor 5ss
42.5
-0.8
3.2
57.8
47.2
Minor BPS
53.3
0.1
2.1
71.36
41.1

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000005208
Chromosome:
16

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000005377
5871584 - 5881738
10155