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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_16_5876804_5877409_F

Intron Information:

Intron Rank:
5
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
5876804 - 5877409
Intron Length:
606

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAACTGAG
5'SS Class:
strong_major
3'SS Sequence:
TTCTCCTCCACAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTAACAT
U12 Branch Point Sequence:
TTCTCCTCCACA
Flanking Amino Acid:
HKGDQEGCKKAIRQLWGEGH
Intron Amino Acid Position:
206

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
81.2
0.74
1.1
72.3
39.5
Major BPS
71
0.52
1.1
77.7
35.3
Major PPT
81.3
0.71
0.7
76.1
26
Minor 5ss
37.6
-1.4
3.2
48.7
47.5
Minor BPS
60.7
0.33
2
75.44
42.2

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000005208
Chromosome:
16

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000005377
5871584 - 5881738
10155