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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_16_5878975_5880094_F

Intron Information:

Intron Rank:
8
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
5878975 - 5880094
Intron Length:
1120

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAAGGAAA
5'SS Class:
strong_major
3'SS Sequence:
TTTTTTTCCCCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTCTTAC
U12 Branch Point Sequence:
GTTTTCTTACTG
Flanking Amino Acid:
AAITVTLSLQDWYFWMPYCS
Intron Amino Acid Position:
338

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
91.6
0.98
0.8
84
28.8
Major BPS
81.5
0.78
0.9
71.6
36.1
Major PPT
90.7
0.92
0.6
84.9
29.9
Minor 5ss
31.6
-2.1
3.1
39
46.4
Minor BPS
62.6
0.26
1.7
67.31
41

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000005208
Chromosome:
16

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000005377
5871584 - 5881738
10155