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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_16_5879039_5881080_F

Intron Information:

Intron Rank:
3
Intron Class:
major-like
Intron Phase:
1
Intron Coordinates:
5879039 - 5881080
Intron Length:
2042

Sequence Information:

Terminal Dinucleotides:
GC-AG
5'SS Sequence:
CAT|GCTACTGAG
5'SS Class:
weak_major
3'SS Sequence:
ACTCTCCTTTCAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTCTTAC
U12 Branch Point Sequence:
TAATTCTTACTC
Flanking Amino Acid:
YLFYFNICSTSGATISIRAE
Intron Amino Acid Position:
105

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
54.8
0.11
1.5
55.4
46.5
Major BPS
81.5
0.78
0.9
71.6
36.1
Major PPT
81.1
0.7
0.8
77.5
30.5
Minor 5ss
26
-2.8
3.9
37
40.6
Minor BPS
61.4
0.34
1.6
67.8
38

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000005208
Chromosome:
16

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000021973
5874841 - 5881738
6898