About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_16_5881288_5881586_F

Intron Information:

Intron Rank:
10
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
5881288 - 5881586
Intron Length:
299

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTGGCAGTG
5'SS Class:
major
3'SS Sequence:
CTTTTCACTTCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTCAC
U12 Branch Point Sequence:
GTTTCCTCATCT
Flanking Amino Acid:
GCGTGRRAAGGTIVHLFLPE
Intron Amino Acid Position:
432

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
63.2
0.31
1.2
56.8
42.6
Major BPS
90.1
0.99
0.7
91.6
20.3
Major PPT
84.8
0.78
0.7
82.3
28
Minor 5ss
32.7
-2
3.7
46.1
49.1
Minor BPS
66.3
0.59
1.8
85.48
40.5

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000005208
Chromosome:
16

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000005377
5871584 - 5881738
10155