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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_16_5890783_5894964_F

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
5890783 - 5894964
Intron Length:
4182

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAATTCT
5'SS Class:
strong_major
3'SS Sequence:
TAACGTTCATCAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
AATTAAC
U12 Branch Point Sequence:
TTAACGTTCATC
Flanking Amino Acid:
GKLTGQVVGLSHETGIKQKS
Intron Amino Acid Position:
176

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
87.8
0.89
0.9
83.8
28
Major BPS
73.1
0.57
0.9
73.7
27.1
Major PPT
65.7
0.35
1
63.4
42.3
Minor 5ss
42.2
-0.9
2.9
59.5
45
Minor BPS
46.6
-0.2
2.4
63.67
42.2

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000005221
Chromosome:
16

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000005406
5888134 - 5895085
6952