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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_16_5892502_5893080_F

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
5892502 - 5893080
Intron Length:
579

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TGT|GTAAGTCTT
5'SS Class:
major
3'SS Sequence:
TTCTCTTTTTCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTCAT
U12 Branch Point Sequence:
TTTCATTTGACA
Flanking Amino Acid:
LCECLSSILCSTLIERFGRK
Intron Amino Acid Position:
65

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
75.6
0.6
1.1
74.7
41.5
Major BPS
100
1.24
0.5
100
0
Major PPT
92.7
0.96
0.6
91.8
19.2
Minor 5ss
42.1
-0.9
3.1
60.2
44.1
Minor BPS
65.4
0.48
1.5
77.03
33.1

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000028596
Chromosome:
16

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000026475
5892310 - 5893485
1176