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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_16_5896283_5898740_F

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
5896283 - 5898740
Intron Length:
2458

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAAGTCGG
5'SS Class:
strong_major
3'SS Sequence:
TTTTCCCCAACAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTCTTAT
U12 Branch Point Sequence:
TTTTCCCCAACA
Flanking Amino Acid:
LSKAMGKPAQYLAIQISPDQ
Intron Amino Acid Position:
37

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
92.1
0.99
0.8
72.7
44.5
Major BPS
91.4
1.03
0.7
79.9
34.9
Major PPT
79.1
0.65
0.8
74.7
29
Minor 5ss
33.6
-1.9
2.9
41.4
45
Minor BPS
68.3
0.57
1.9
84.96
34.3

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000019668
Chromosome:
16

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000018977
5896175 - 5899668
3494