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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_16_5898914_5899601_F

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
5898914 - 5899601
Intron Length:
688

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTGAGCTCA
5'SS Class:
strong_major
3'SS Sequence:
TCTTCTCTTTCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
AGCTAAC
U12 Branch Point Sequence:
CTCCTCTCAGCA
Flanking Amino Acid:
LNKQLKIPSDRIYVSFFEIS
Intron Amino Acid Position:
94

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
85.3
0.83
0.9
73.7
33.1
Major BPS
60.6
0.26
1.1
61.4
34.2
Major PPT
90.3
0.91
0.6
88.5
21.1
Minor 5ss
38.7
-1.3
2.9
47.9
47.8
Minor BPS
47
-0.2
1.8
56.43
42.9

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000019668
Chromosome:
16

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000018977
5896175 - 5899668
3494