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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_16_5902705_5903312_F

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
5902705 - 5903312
Intron Length:
608

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTCGGGGAG
5'SS Class:
major
3'SS Sequence:
TCTCCCATCACAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
AATTAAT
U12 Branch Point Sequence:
TACTCCCTAACT
Flanking Amino Acid:
LAKATGKPAQYIAVHIIPDQ
Intron Amino Acid Position:
37

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
63.7
0.32
1.4
54.9
44.4
Major BPS
83
0.82
0.8
82
24.9
Major PPT
75.3
0.57
0.8
68.9
30
Minor 5ss
22.6
-3.2
3.4
28.2
44
Minor BPS
72.4
0.78
1.7
86.22
39.4

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000005485
Chromosome:
16

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000005665
5902597 - 5904450
1854