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Intron Name: Anas_platyrhynchos_platyrhynchos_16_5905122_5905607_F

Intron Information:

Intron Rank:

Intron Class:

major-like

Intron Phase:

Intron Coordinates:

5905122 - 5905607

Intron Length:

486

Sequence Information:

Terminal Dinucleotides:

GC-AG

5'SS Sequence:

GCA|GCAGGAGGC

5'SS Class:

weak_major

3'SS Sequence:

ATCTAAAAGGAAG|A

3'SS Class:

degenerate_major

U2 Branch Point Sequence:

TCTTAAA

U12 Branch Point Sequence:

AAATCTTAAAAA

Flanking Amino Acid:

GRRREAAERAKRNDETERAE

Intron Amino Acid Position:

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

57.3

0.17

1.4

59.1

39.6

Major BPS

77.8

0.69

78.2

31.8

Major PPT

47.2

-0.1

1.2

43.7

39.9

Minor 5ss

21.3

-3.3

4.2

37.2

41.7

Minor BPS

0.06

1.7

61.2

38.4

Associated Gene:

Gene:

Ensembl Gene ID:

ENSAPLG00000005543

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000005723

5904882 - 5915829

10948