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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_16_5906059_5906927_F

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
5906059 - 5906927
Intron Length:
869

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTACCTTGA
5'SS Class:
major
3'SS Sequence:
CATTTTTGTTCAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
CATTAAC
U12 Branch Point Sequence:
GTATTCCCATTT
Flanking Amino Acid:
QMNGIESFFPVQAEVIPAVL
Intron Amino Acid Position:
186

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
72.2
0.52
1.2
66.1
42.4
Major BPS
69.5
0.49
1
71.3
30.3
Major PPT
81.8
0.71
0.9
80.5
36.7
Minor 5ss
44
-0.6
2.9
59.1
45.3
Minor BPS
43.8
-0.3
2
62.41
41.6

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000005543
Chromosome:
16

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000005723
5904882 - 5915829
10948