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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_16_5907493_5907677_F

Intron Information:

Intron Rank:
5
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
5907493 - 5907677
Intron Length:
185

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTATATAAC
5'SS Class:
major
3'SS Sequence:
CATCTCTTTGCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
CACTGAT
U12 Branch Point Sequence:
TTGTGGCTAACA
Flanking Amino Acid:
VLPTKELAQQVSKVFNIYTD
Intron Amino Acid Position:
259

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
79.8
0.7
1
76.4
32.3
Major BPS
71.2
0.53
1
61
37.5
Major PPT
82.6
0.73
0.8
76.6
31.5
Minor 5ss
41.5
-0.9
2.7
53.5
43.9
Minor BPS
45.8
-0.3
2.6
67.66
44.8

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000005543
Chromosome:
16

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000005723
5904882 - 5915829
10948