About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_16_5908464_5909091_F

Intron Information:

Intron Rank:
7
Intron Class:
major-like
Intron Phase:
0
Intron Coordinates:
5908464 - 5909091
Intron Length:
628

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CTG|GTGAGTCAG
5'SS Class:
strong_major
3'SS Sequence:
TTTGTGAATTGAG|A
3'SS Class:
degenerate_major
U2 Branch Point Sequence:
TATTAAA
U12 Branch Point Sequence:
TCTTTGTGAATT
Flanking Amino Acid:
GFNLTQLRFLIIDEADRMID
Intron Amino Acid Position:
331

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
81.5
0.74
0.9
66.7
40.4
Major BPS
82.6
0.81
0.8
82.2
24.5
Major PPT
52
0.05
1.8
63.5
46.3
Minor 5ss
28.3
-2.5
2.7
29
37.1
Minor BPS
52.9
0.17
2.1
75.82
41.6

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000005543
Chromosome:
16

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000005723
5904882 - 5915829
10948