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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_16_5910107_5910790_F

Intron Information:

Intron Rank:
9
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
5910107 - 5910790
Intron Length:
684

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TCG|GTATAACAT
5'SS Class:
major
3'SS Sequence:
CTGCTGACTGCAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
AAGTAAT
U12 Branch Point Sequence:
TTTGTCTGAATT
Flanking Amino Acid:
EKYTLPEGLSQCYVPCNLNS
Intron Amino Acid Position:
446

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
64.3
0.34
1.1
57.9
40.8
Major BPS
67.8
0.44
1.1
67.7
36.5
Major PPT
69.7
0.44
1
62.4
38.5
Minor 5ss
39.6
-1.2
3.3
56.6
47.6
Minor BPS
67.8
0.64
1.5
84.15
37

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000005543
Chromosome:
16

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000005723
5904882 - 5915829
10948