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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_16_5910907_5911006_F

Intron Information:

Intron Rank:
10
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
5910907 - 5911006
Intron Length:
100

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTGAATGAA
5'SS Class:
strong_major
3'SS Sequence:
TATTTGCCTACAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TAATAAA
U12 Branch Point Sequence:
ATTTGCCTACAG
Flanking Amino Acid:
CFTNSREASHRLFLLIQAFG
Intron Amino Acid Position:
484

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82.6
0.77
0.9
76.1
27.5
Major BPS
70.8
0.52
1
70.6
31.6
Major PPT
80.5
0.69
0.9
73.5
36.8
Minor 5ss
25.9
-2.8
3
30.8
43.1
Minor BPS
43
-0.6
2.3
55.76
45.1

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000005543
Chromosome:
16

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000005723
5904882 - 5915829
10948