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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_16_5911124_5912029_F

Intron Information:

Intron Rank:
11
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
5911124 - 5912029
Intron Length:
906

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ACT|GTGAGTATC
5'SS Class:
major
3'SS Sequence:
TATTTAAAACCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ATTTAAA
U12 Branch Point Sequence:
GTTACCTGAAAA
Flanking Amino Acid:
IKEFEQGKIQLLISTDATAR
Intron Amino Acid Position:
523

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
73
0.54
1.1
74.7
35.4
Major BPS
81.6
0.78
0.8
82
24.9
Major PPT
65.2
0.34
1.1
58
45.4
Minor 5ss
37.8
-1.4
3
55.7
41.6
Minor BPS
61.6
0.36
1.6
71.97
39

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000005543
Chromosome:
16

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000005723
5904882 - 5915829
10948