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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_16_5912132_5912672_F

Intron Information:

Intron Rank:
12
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
5912132 - 5912672
Intron Length:
541

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CCG|GTAGGTAAG
5'SS Class:
major
3'SS Sequence:
TTTTTGATTTCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTGAT
U12 Branch Point Sequence:
TTGTTTTTGATT
Flanking Amino Acid:
APQFIRTYIHRIGRTARAGN
Intron Amino Acid Position:
557

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
77.2
0.64
1.1
69.2
43.2
Major BPS
96.4
1.15
0.6
85.7
34.9
Major PPT
87.9
0.85
0.8
85.7
33.4
Minor 5ss
34.2
-1.8
3
42.2
44.7
Minor BPS
70.3
0.72
1.1
81.5
34.7

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000005543
Chromosome:
16

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000005723
5904882 - 5915829
10948