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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_16_5915510_5917630_F

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
5915510 - 5917630
Intron Length:
2121

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTGAGCGGT
5'SS Class:
strong_major
3'SS Sequence:
TTTCCTTCCTCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TGAGCAT
U12 Branch Point Sequence:
TGGTGAGTAAGA
Flanking Amino Acid:
FEFKHVELMKGQHRTEEFRK
Intron Amino Acid Position:
38

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
84.7
0.82
0.9
72.2
39.5
Major BPS
49.2
-0
1.5
59.7
46.7
Major PPT
85.7
0.8
0.6
84.7
23
Minor 5ss
32.6
-2
3.4
46.8
48.5
Minor BPS
38.6
-0.8
2.6
52.71
45.3

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000005725
Chromosome:
16

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000040547
5915398 - 5921224
5827
ENSAPLT00000036268
5915398 - 5921224
5827
ENSAPLT00000022636
5915398 - 5920249
4852
ENSAPLT00000005908
5915398 - 5922447
7050