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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_16_59171_59331_R

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
59171 - 59331
Intron Length:
161

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTATGTGGG
5'SS Class:
strong_major
3'SS Sequence:
TCTTCCCTTGTAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TGAAAAT
U12 Branch Point Sequence:
TAAGCACTGACT
Flanking Amino Acid:
ILEQKEKKRQRAELLSKLNE
Intron Amino Acid Position:
98

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
85.2
0.83
0.9
68.8
42.3
Major BPS
55.4
0.14
1.3
61.7
41.5
Major PPT
82.4
0.73
0.7
77.6
24.3
Minor 5ss
38.2
-1.3
3.1
49.2
47.1
Minor BPS
46.9
-0.1
2
67.18
43

Associated Gene:

Gene:
DHX37
Ensembl Gene ID:
ENSAPLG00000009562
Chromosome:
16

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000010012
43730 - 60314
16585