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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_16_5917719_5920131_F

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
5917719 - 5920131
Intron Length:
2413

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTAAGGCTT
5'SS Class:
strong_major
3'SS Sequence:
TCTCTCTCTGCAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
GCCTCAC
U12 Branch Point Sequence:
TCACGCCCAGGT
Flanking Amino Acid:
LKDGSFTLAESLSVLATTSL
Intron Amino Acid Position:
67

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
90.9
0.96
0.8
82.5
37
Major BPS
54.7
0.12
1.2
59.2
39.1
Major PPT
85.8
0.81
0.7
80.7
24.4
Minor 5ss
36.7
-1.5
3.5
55.8
48.4
Minor BPS
32.7
-1.2
2.2
47.28
44.5

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000005725
Chromosome:
16

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000022636
5915398 - 5920249
4852