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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_16_5918961_5919147_F

Intron Information:

Intron Rank:
4
Intron Class:
major-like
Intron Phase:
1
Intron Coordinates:
5918961 - 5919147
Intron Length:
187

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TCG|GTCATGGGA
5'SS Class:
weak_major
3'SS Sequence:
GAGAAACTGGAAG|G
3'SS Class:
degenerate_major
U2 Branch Point Sequence:
TCCTTAC
U12 Branch Point Sequence:
GTCTCCAGAGAA
Flanking Amino Acid:
KLKQWTLKLIGVTEELNVVL
Intron Amino Acid Position:
122

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
54
0.1
1.4
48.1
42.5
Major BPS
68.9
0.47
1
59.6
38.6
Major PPT
44.9
-0.2
1.2
35
39.9
Minor 5ss
24.6
-2.9
3.2
30.1
43
Minor BPS
43.7
-0.4
2
55.85
42.3

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000005725
Chromosome:
16

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000040547
5915398 - 5921224
5827