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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_16_5919273_5920131_F

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
5919273 - 5920131
Intron Length:
859

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTGAGAATC
5'SS Class:
strong_major
3'SS Sequence:
TCTCTCTCTGCAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
GCCTCAC
U12 Branch Point Sequence:
TCACGCCCAGGT
Flanking Amino Acid:
DLVALVELMQPVGAGYNLFE
Intron Amino Acid Position:
177

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
89.3
0.93
0.8
84.1
26.4
Major BPS
54.7
0.12
1.2
59.2
39.1
Major PPT
85.8
0.81
0.7
80.7
24.4
Minor 5ss
32.6
-2
3
42.8
44.4
Minor BPS
32.7
-1.2
2.2
47.28
44.5

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000005725
Chromosome:
16

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000036268
5915398 - 5921224
5827
ENSAPLT00000005908
5915398 - 5922447
7050
ENSAPLT00000040547
5915398 - 5921224
5827