Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_16_5920320_5921193_F

Intron Information:

Intron Rank:

Intron Class:

major-like

Intron Phase:

Intron Coordinates:

5920320 - 5921193

Intron Length:

874

Sequence Information:

Terminal Dinucleotides:

GC-AG

5'SS Sequence:

AAA|GCAGTCTAG

5'SS Class:

weak_major

3'SS Sequence:

CTGTGGTGGCCAG|C

3'SS Class:

degenerate_major

U2 Branch Point Sequence:

CCAGTAC

U12 Branch Point Sequence:

TGGGCCAGTACC

Flanking Amino Acid:

LLEHFKHQLLNPRVSRVPSR

Intron Amino Acid Position:

239

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

57.3

0.17

1.3

43.3

Major BPS

40.1

-0.6

1.2

31.7

Major PPT

56.8

0.15

1.2

49.5

Minor 5ss

33.3

-1.9

4.2

45.7

44.2

Minor BPS

42.6

-0.6

2.1

53.29

43.9

Associated Gene:

Gene:

Ensembl Gene ID:

ENSAPLG00000005725

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000040547

5915398 - 5921224

5827

ENSAPLT00000036268

5915398 - 5921224

5827