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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_16_5925446_5925552_F

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
5925446 - 5925552
Intron Length:
107

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTGGGACGG
5'SS Class:
major
3'SS Sequence:
GGCTCTTTGGCAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
AACTCAT
U12 Branch Point Sequence:
TCCCCCGAAACT
Flanking Amino Acid:
FEFKHVELFKDSVLGKKPAA
Intron Amino Acid Position:
38

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
72.9
0.54
1.1
53.4
45.5
Major BPS
78.3
0.7
0.8
77.7
26.1
Major PPT
68.9
0.43
1.1
64.7
41.3
Minor 5ss
24.5
-2.9
3.1
29.7
43.1
Minor BPS
47.6
-0.1
2.3
68.71
48

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000005723
Chromosome:
16

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000005907
5925334 - 5935340
10007