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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_16_5931618_5933978_F

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
5931618 - 5933978
Intron Length:
2361

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAGGAGA
5'SS Class:
strong_major
3'SS Sequence:
GTTCTCTCCTCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TCTACAT
U12 Branch Point Sequence:
TGTACTCTACAT
Flanking Amino Acid:
ANAPKTMWIKVLIPLFTGQP
Intron Amino Acid Position:
137

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
90
0.94
0.8
78.7
37.2
Major BPS
70.2
0.5
1.1
77.2
36
Major PPT
79.7
0.67
0.8
77.3
31.4
Minor 5ss
31.6
-2.1
3.1
40
45.7
Minor BPS
46
-0.2
2
67.61
42.7

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000005723
Chromosome:
16

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000005907
5925334 - 5935340
10007