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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_16_5934156_5935139_F

Intron Information:

Intron Rank:
5
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
5934156 - 5935139
Intron Length:
984

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAA|GTGAGTGCT
5'SS Class:
strong_major
3'SS Sequence:
TCGCTTTCTGCAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
CCGTTAT
U12 Branch Point Sequence:
TCACCGTTATTC
Flanking Amino Acid:
DLVAIVELMQPVGVGCDIFE
Intron Amino Acid Position:
196

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82
0.75
0.9
77.7
30.1
Major BPS
56.4
0.16
1.3
49
44.8
Major PPT
81.6
0.71
0.8
76.6
32
Minor 5ss
31.6
-2.1
3.2
41.8
38.8
Minor BPS
45.7
-0.3
2.2
56.27
42.5

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000005723
Chromosome:
16

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000005907
5925334 - 5935340
10007