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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_16_5939075_5939513_F

Intron Information:

Intron Rank:
2
Intron Class:
major-like
Intron Phase:
2
Intron Coordinates:
5939075 - 5939513
Intron Length:
439

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GCG|GTGAGTGCA
5'SS Class:
strong_major
3'SS Sequence:
TATACCTGATAAG|G
3'SS Class:
degenerate_major
U2 Branch Point Sequence:
CTCTTAT
U12 Branch Point Sequence:
TTGCTCTTATAC
Flanking Amino Acid:
LTAELGLGTERIVIRFYPLE
Intron Amino Acid Position:
95

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82
0.75
0.9
71.5
33.9
Major BPS
79.1
0.72
1
69.3
38.4
Major PPT
53.4
0.08
1.2
58
41.8
Minor 5ss
28
-2.5
3
33.3
41.7
Minor BPS
53
0.07
1.7
64.68
40.7

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000005726
Chromosome:
16

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000005909
5938696 - 5939586
891