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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_16_5946964_5947332_F

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
5946964 - 5947332
Intron Length:
369

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAA|GTAAGTAAA
5'SS Class:
strong_major
3'SS Sequence:
TTTTAAACTACAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTAAA
U12 Branch Point Sequence:
ACTTTTTAAACT
Flanking Amino Acid:
SHKTQTKEAQEAEAFALYHK
Intron Amino Acid Position:
15

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
87.7
0.89
0.9
86
23.6
Major BPS
90.4
1
0.7
90.2
19.3
Major PPT
78.4
0.64
0.9
71.2
38.4
Minor 5ss
36.8
-1.5
2.7
42.6
38.4
Minor BPS
62.9
0.48
1.6
77.06
40.2

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000005835
Chromosome:
16

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000006086
5946922 - 5965564
18643