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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_16_5949529_5950386_F

Intron Information:

Intron Rank:
5
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
5949529 - 5950386
Intron Length:
858

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ATG|GTGGGTGTC
5'SS Class:
major
3'SS Sequence:
TAATATTTCCCAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TCTTAAT
U12 Branch Point Sequence:
CATTTCTTAATA
Flanking Amino Acid:
RKDSLRMFLKCDMSIHNVNV
Intron Amino Acid Position:
201

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
74.9
0.59
1
68.4
36.9
Major BPS
87
0.92
0.9
86.2
29.1
Major PPT
74.4
0.55
1
65.8
44.5
Minor 5ss
30.6
-2.2
3.5
39.3
41.1
Minor BPS
75.5
0.8
1.1
75.8
35.8

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000005835
Chromosome:
16

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000006086
5946922 - 5965564
18643