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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_16_59502_60193_R

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
59502 - 60193
Intron Length:
692

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTGCGGGGA
5'SS Class:
major
3'SS Sequence:
AACATGCTTGCAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
AAATAAC
U12 Branch Point Sequence:
AAATGAATAACC
Flanking Amino Acid:
HPVPAELQLGDGAKLKGVDE
Intron Amino Acid Position:
41

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
74.5
0.58
1
60.3
40.6
Major BPS
61.3
0.28
1
62
30.6
Major PPT
67
0.38
1
58.4
42.1
Minor 5ss
22.1
-3.2
3.4
29
43.5
Minor BPS
44.9
-0.4
2.2
57.66
40

Associated Gene:

Gene:
DHX37
Ensembl Gene ID:
ENSAPLG00000009562
Chromosome:
16

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000010012
43730 - 60314
16585