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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_16_5955574_5955809_F

Intron Information:

Intron Rank:
11
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
5955574 - 5955809
Intron Length:
236

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTGAGAGTC
5'SS Class:
strong_major
3'SS Sequence:
AATTGATTTGCAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
AATTGAT
U12 Branch Point Sequence:
TTATCGTAAAAC
Flanking Amino Acid:
WLLTKGKSSTVAPRNCPAAS
Intron Amino Acid Position:
547

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
87.7
0.89
0.8
78.5
28.9
Major BPS
79.8
0.74
0.9
69.4
37.7
Major PPT
74.6
0.55
1
66.8
43.2
Minor 5ss
29.5
-2.3
3.4
40.8
45.7
Minor BPS
48.8
-0.1
2.4
68.43
42.8

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000005835
Chromosome:
16

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000006086
5946922 - 5965564
18643