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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_16_5958960_5959648_F

Intron Information:

Intron Rank:
15
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
5958960 - 5959648
Intron Length:
689

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAACCTGT
5'SS Class:
major
3'SS Sequence:
GCTTCTTTATTAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTGTAT
U12 Branch Point Sequence:
GCTTCTTTATTA
Flanking Amino Acid:
LVRLTTNLIQIIDCSMAVQE
Intron Amino Acid Position:
803

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
76.1
0.62
1.2
69.7
43.7
Major BPS
71.5
0.53
1.4
71.7
44.6
Major PPT
74.2
0.55
0.9
74.2
35.2
Minor 5ss
54
0.14
2.6
74.1
42.2
Minor BPS
61.5
0.36
1.6
67.41
39.9

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000005835
Chromosome:
16

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000006086
5946922 - 5965564
18643