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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_16_5959803_5960045_F

Intron Information:

Intron Rank:
16
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
5959803 - 5960045
Intron Length:
243

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAATTTAG
5'SS Class:
strong_major
3'SS Sequence:
TCCTCTCTTACAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TATTTAT
U12 Branch Point Sequence:
TATTTATTAACT
Flanking Amino Acid:
QQQQQNQGEEASPDTPMLPS
Intron Amino Acid Position:
854

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
85.3
0.83
0.9
76.8
34.6
Major BPS
88.7
0.96
0.8
78
36.5
Major PPT
85.1
0.79
0.7
79.4
26.3
Minor 5ss
39.6
-1.2
2.8
49.3
46.9
Minor BPS
75.9
0.89
1.5
90.34
32.7

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000005835
Chromosome:
16

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000006086
5946922 - 5965564
18643