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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_16_6022475_6023563_F

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
6022475 - 6023563
Intron Length:
1089

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAA|GTAAGACAG
5'SS Class:
major
3'SS Sequence:
TTCTTTTATTAAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ATTTCAA
U12 Branch Point Sequence:
ATTTCAATAATA
Flanking Amino Acid:
LEDTLNDLTQVSEDQSSKSS
Intron Amino Acid Position:
69

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
78.5
0.67
1
65.3
40.6
Major BPS
82
0.79
0.8
83.7
25.7
Major PPT
77.2
0.61
1
83.3
31
Minor 5ss
33
-1.9
3.1
39.7
39.9
Minor BPS
60.8
0.33
1.8
76.37
34

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000026015
Chromosome:
16

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000041971
6020261 - 6051371
31111