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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_16_6024203_6024669_F

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
6024203 - 6024669
Intron Length:
467

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAAAACAT
5'SS Class:
strong_major
3'SS Sequence:
ATTCTCTATTCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TAATTAT
U12 Branch Point Sequence:
ACTTCATTAATT
Flanking Amino Acid:
MSETYMLIKQVDEEAALEQA
Intron Amino Acid Position:
282

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
81.7
0.75
0.9
74
36.4
Major BPS
76.9
0.67
1
66.3
40.4
Major PPT
80.4
0.68
0.9
78.3
34.6
Minor 5ss
33
-1.9
3.3
47.4
48
Minor BPS
71.9
0.77
1.5
83.58
37.4

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000026015
Chromosome:
16

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000041971
6020261 - 6051371
31111